Index

A

adjustTexts1D() (in module decneo.commonFunctions) Analysis (class in decneo.analysisPipeline) analyzeAllPeaksOfCombinationVariant() (Analysis method) analyzeBootstrapExperiments() (Analysis method)

analyzeCase() (Analysis method) analyzeCombinationVariant() (Analysis method) analyzePerGeneCombinationVariant() (Analysis method) autoDetect1dGroups() (in module decneo.commonFunctions)

B

binomialEnrichmentProbability() (in module decneo.commonFunctions)

bootstrapMaxpeakPlot() (Analysis method)

C

cleanListString() (in module decneo.commonFunctions) clusterData() (in module decneo.commonFunctions)

combinationPanels (Analysis attribute) combinationPanelsDict (Analysis attribute) compareTwoCases() (Analysis method)

D

decneo.commonFunctions (module) decneo.genes (module)

deprecatedPanels (Analysis attribute) downloadFile() (in module decneo.commonFunctions)

G

generateAnalysisReport() (Analysis method) get_df_distance() (in module decneo.commonFunctions) get_mean_std_cov_ofDataframe() (in module decneo.commonFunctions) getDistanceOfBatch() (in module decneo.commonFunctions)

getGenesOfPeak() (in module decneo.commonFunctions) getPanglaoDBAnnotationsSummaryDf() (in module decneo.commonFunctions) getPeaks() (in module decneo.commonFunctions) getROC() (in module decneo.commonFunctions)

K

KeyInStore() (in module decneo.commonFunctions)

KeysOfStore() (in module decneo.commonFunctions)

M

makeBarplot() (in module decneo.commonFunctions)

metric_euclidean_missing() (in module decneo.commonFunctions) movingAverageCentered() (in module decneo.commonFunctions)

N

normSum1() (in module decneo.commonFunctions)

P

populateExternalPanelsData() (in module decneo.genes) prepareBootstrapExperiments() (Analysis method)

prepareDEG() (Analysis method) preparePerBatchCase() (Analysis method) process() (analysisPipeline method)

R

readRDataFile() (in module decneo.commonFunctions) reanalyzeMain() (Analysis method)

reduce() (in module decneo.commonFunctions) reindexSeries() (in module decneo.commonFunctions) runPairOfExperiments() (Analysis method)

S

scramble() (Analysis method)

silhouette() (in module decneo.commonFunctions) standardPanels (Analysis attribute)

T

testNumbersOfClusters() (in module decneo.commonFunctions)